chrom large_string | pos int64 | ref large_string | alt large_string | AC int64 | AN int64 | AF float64 | consequence large_string | consequence_cre large_string |
|---|---|---|---|---|---|---|---|---|
1 | 10,111 | C | A | 1 | 44,330 | 0.000023 | intergenic_variant | pELS |
1 | 10,131 | C | A | 1 | 105,956 | 0.000009 | intergenic_variant | pELS |
1 | 10,139 | A | T | 1 | 58,784 | 0.000017 | intergenic_variant | pELS |
1 | 10,140 | A | C | 2 | 72,760 | 0.000027 | intergenic_variant | pELS |
1 | 10,141 | C | G | 1 | 50,842 | 0.00002 | intergenic_variant | pELS |
1 | 10,145 | A | T | 3 | 16,958 | 0.000177 | intergenic_variant | pELS |
1 | 10,147 | C | G | 2 | 456 | 0.004386 | intergenic_variant | pELS |
1 | 10,148 | C | A | 1 | 860 | 0.001163 | intergenic_variant | pELS |
1 | 10,148 | C | G | 1 | 858 | 0.001166 | intergenic_variant | pELS |
1 | 10,149 | C | A | 1 | 17,024 | 0.000059 | intergenic_variant | pELS |
1 | 10,154 | C | A | 1 | 27,646 | 0.000036 | intergenic_variant | pELS |
1 | 10,157 | T | G | 1 | 5,704 | 0.000175 | intergenic_variant | pELS |
1 | 10,202 | C | G | 1 | 71,460 | 0.000014 | intergenic_variant | pELS |
1 | 10,218 | A | G | 1 | 52,108 | 0.000019 | intergenic_variant | pELS |
1 | 10,227 | C | T | 1 | 74,614 | 0.000013 | intergenic_variant | pELS |
1 | 10,261 | T | A | 1 | 2,540 | 0.000394 | intergenic_variant | pELS_flank |
1 | 10,264 | C | A | 5 | 103,276 | 0.000048 | intergenic_variant | pELS_flank |
1 | 10,267 | T | C | 3 | 3,058 | 0.000981 | intergenic_variant | pELS_flank |
1 | 10,279 | T | G | 1 | 2,154 | 0.000464 | intergenic_variant | pELS_flank |
1 | 10,285 | T | C | 16 | 1,168 | 0.013699 | intergenic_variant | pELS_flank |
1 | 10,330 | C | A | 16 | 486 | 0.032922 | intergenic_variant | pELS_flank |
1 | 10,357 | T | C | 5 | 2,326 | 0.00215 | intergenic_variant | pELS_flank |
1 | 10,367 | C | T | 33 | 133,076 | 0.000248 | intergenic_variant | pELS_flank |
1 | 10,369 | T | C | 5 | 27,416 | 0.000182 | intergenic_variant | pELS_flank |
1 | 10,370 | A | C | 2 | 53,358 | 0.000037 | intergenic_variant | pELS_flank |
1 | 10,393 | C | T | 8 | 27,336 | 0.000293 | intergenic_variant | pELS |
1 | 10,400 | C | T | 9 | 55,082 | 0.000163 | intergenic_variant | pELS |
1 | 10,409 | A | G | 1 | 67,086 | 0.000015 | intergenic_variant | pELS |
1 | 10,414 | A | G | 1 | 99,088 | 0.00001 | intergenic_variant | pELS |
1 | 10,420 | A | G | 1 | 90,658 | 0.000011 | intergenic_variant | pELS |
1 | 10,426 | A | G | 2 | 105,484 | 0.000019 | intergenic_variant | pELS |
1 | 10,428 | C | A | 3 | 106,028 | 0.000028 | intergenic_variant | pELS |
1 | 10,430 | C | T | 1 | 112,300 | 0.000009 | intergenic_variant | pELS |
1 | 10,432 | A | G | 1 | 81,890 | 0.000012 | intergenic_variant | pELS |
1 | 10,432 | A | T | 5 | 81,874 | 0.000061 | intergenic_variant | pELS |
1 | 10,435 | C | G | 1 | 130,064 | 0.000008 | intergenic_variant | pELS |
1 | 10,436 | C | T | 2 | 126,386 | 0.000016 | intergenic_variant | pELS |
1 | 10,437 | T | G | 5 | 60,520 | 0.000083 | intergenic_variant | pELS |
1 | 10,438 | A | C | 7 | 66,826 | 0.000105 | intergenic_variant | pELS |
1 | 10,438 | A | T | 7 | 66,790 | 0.000105 | intergenic_variant | pELS |
1 | 10,440 | C | T | 1 | 5,534 | 0.000181 | intergenic_variant | pELS |
1 | 10,441 | C | G | 4 | 9,772 | 0.000409 | intergenic_variant | pELS |
1 | 10,442 | C | A | 2 | 76,330 | 0.000026 | intergenic_variant | pELS |
1 | 10,442 | C | G | 2 | 76,310 | 0.000026 | intergenic_variant | pELS |
1 | 10,442 | C | T | 2 | 76,304 | 0.000026 | intergenic_variant | pELS |
1 | 10,443 | C | G | 4 | 13,756 | 0.000291 | intergenic_variant | pELS |
1 | 10,444 | T | G | 5 | 16,058 | 0.000311 | intergenic_variant | pELS |
1 | 10,445 | A | C | 10 | 49,740 | 0.000201 | intergenic_variant | pELS |
1 | 10,445 | A | G | 15 | 49,670 | 0.000302 | intergenic_variant | pELS |
1 | 10,445 | A | T | 3 | 49,748 | 0.00006 | intergenic_variant | pELS |
1 | 10,447 | C | T | 1 | 77,622 | 0.000013 | intergenic_variant | pELS |
1 | 10,448 | C | G | 1 | 92,274 | 0.000011 | intergenic_variant | pELS |
1 | 10,452 | A | T | 2 | 60,974 | 0.000033 | intergenic_variant | pELS |
1 | 10,454 | C | G | 2 | 95,142 | 0.000021 | intergenic_variant | pELS |
1 | 10,466 | C | T | 1 | 89,606 | 0.000011 | intergenic_variant | pELS |
1 | 10,467 | C | G | 1 | 88,444 | 0.000011 | intergenic_variant | pELS |
1 | 10,467 | C | T | 1 | 88,442 | 0.000011 | intergenic_variant | pELS |
1 | 10,469 | C | G | 60 | 6,178 | 0.009712 | intergenic_variant | pELS |
1 | 10,472 | G | T | 1 | 10,346 | 0.000097 | intergenic_variant | pELS |
1 | 10,473 | G | A | 473 | 14,204 | 0.033301 | intergenic_variant | pELS |
1 | 10,475 | A | T | 7 | 39,696 | 0.000176 | intergenic_variant | pELS |
1 | 10,482 | G | A | 2 | 44,456 | 0.000045 | intergenic_variant | pELS |
1 | 10,483 | C | A | 3 | 68,760 | 0.000044 | intergenic_variant | pELS |
1 | 10,483 | C | G | 1 | 68,772 | 0.000015 | intergenic_variant | pELS |
1 | 10,484 | C | A | 4 | 80,050 | 0.00005 | intergenic_variant | pELS |
1 | 10,486 | G | A | 1 | 51,532 | 0.000019 | intergenic_variant | pELS |
1 | 10,486 | G | C | 2 | 51,532 | 0.000039 | intergenic_variant | pELS |
1 | 10,489 | C | T | 3 | 75,974 | 0.000039 | intergenic_variant | pELS |
1 | 10,490 | G | A | 19 | 56,492 | 0.000336 | intergenic_variant | pELS |
1 | 10,491 | C | G | 1 | 85,100 | 0.000012 | intergenic_variant | pELS |
1 | 10,492 | C | T | 1,695 | 58,920 | 0.028768 | intergenic_variant | pELS |
1 | 10,493 | C | G | 59 | 76,216 | 0.000774 | intergenic_variant | pELS |
1 | 10,497 | C | T | 3 | 81,540 | 0.000037 | intergenic_variant | pELS |
1 | 10,498 | G | T | 3 | 67,988 | 0.000044 | intergenic_variant | pELS |
1 | 10,503 | T | C | 4 | 72,046 | 0.000056 | intergenic_variant | pELS |
1 | 10,504 | G | C | 46 | 72,162 | 0.000637 | intergenic_variant | pELS |
1 | 10,506 | C | G | 1 | 77,026 | 0.000013 | intergenic_variant | pELS |
1 | 10,511 | G | C | 2 | 75,410 | 0.000027 | intergenic_variant | pELS |
1 | 10,513 | A | G | 1 | 77,566 | 0.000013 | intergenic_variant | pELS |
1 | 10,514 | G | C | 1 | 76,640 | 0.000013 | intergenic_variant | pELS |
1 | 10,515 | A | C | 1 | 75,396 | 0.000013 | intergenic_variant | pELS |
1 | 10,515 | A | G | 2 | 75,410 | 0.000027 | intergenic_variant | pELS |
1 | 10,518 | T | C | 2 | 75,128 | 0.000027 | intergenic_variant | pELS |
1 | 10,519 | G | A | 1 | 62,986 | 0.000016 | intergenic_variant | pELS |
1 | 10,539 | C | A | 3 | 73,734 | 0.000041 | intergenic_variant | pELS |
1 | 10,543 | G | A | 3 | 72,944 | 0.000041 | intergenic_variant | pELS |
1 | 10,550 | G | A | 1 | 71,906 | 0.000014 | intergenic_variant | pELS |
1 | 10,552 | G | A | 1 | 71,350 | 0.000014 | intergenic_variant | pELS |
1 | 10,552 | G | C | 1 | 71,350 | 0.000014 | intergenic_variant | pELS |
1 | 10,555 | G | C | 4 | 70,304 | 0.000057 | intergenic_variant | pELS |
1 | 10,563 | C | A | 16 | 67,110 | 0.000238 | intergenic_variant | pELS |
1 | 10,563 | C | T | 3 | 67,120 | 0.000045 | intergenic_variant | pELS |
1 | 10,565 | C | T | 2 | 66,612 | 0.00003 | intergenic_variant | pELS |
1 | 10,567 | G | A | 2 | 66,144 | 0.00003 | intergenic_variant | pELS |
1 | 10,571 | C | T | 1 | 63,484 | 0.000016 | intergenic_variant | pELS |
1 | 10,575 | C | G | 2 | 60,562 | 0.000033 | intergenic_variant | pELS |
1 | 10,578 | G | C | 2 | 49,720 | 0.00004 | intergenic_variant | pELS |
1 | 10,581 | G | A | 1 | 54,720 | 0.000018 | intergenic_variant | pELS |
1 | 10,582 | T | C | 5 | 53,586 | 0.000093 | intergenic_variant | pELS |
1 | 10,583 | G | A | 326 | 42,092 | 0.007745 | intergenic_variant | pELS |
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in Data Studio
gnomAD v4.1 Variants with Consequence Annotations
This dataset contains SNVs from gnomAD v4.1 genomes joined with variant consequence annotations.
Code: https://github.com/gonzalobenegas/gnomad
Columns
Coordinates
chrom: Chromosome (1-22, X, Y)pos: Position (1-based)ref: Reference allelealt: Alternate allele
gnomAD Allele Frequencies
AC: Allele countAN: Allele numberAF: Allele frequency
Consequence Annotations
Columns from hg38-variant-consequences.
Processing
- Only PASS variants are included
- Only biallelic SNVs are included
- Left join with consequences
- Sorted by (chrom, pos, ref, alt)
Sources
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