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The dataset generation failed
Error code:   DatasetGenerationError
Exception:    CastError
Message:      Couldn't cast
document_id: string
document_content: string
parent_id: string
metadata: null
task_split: string
passage_qrels: list<item: struct<id: string, label: double>>
  child 0, item: struct<id: string, label: double>
      child 0, id: string
      child 1, label: double
full_document_qrels: list<item: struct<id: string, label: double>>
  child 0, item: struct<id: string, label: double>
      child 0, id: string
      child 1, label: double
instruction: string
use_max_p: bool
query_content: string
query_id: string
passage_binary_qrels: null
to
{'query_id': Value('string'), 'query_content': Value('string'), 'instruction': Value('string'), 'passage_qrels': List({'id': Value('string'), 'label': Value('float64')}), 'passage_binary_qrels': Value('null'), 'full_document_qrels': List({'id': Value('string'), 'label': Value('float64')}), 'use_max_p': Value('bool'), 'metadata': Value('string'), 'task_split': Value('string')}
because column names don't match
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1872, in _prepare_split_single
                  for key, table in generator:
                                    ^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/packaged_modules/json/json.py", line 260, in _generate_tables
                  self._cast_table(pa_table, json_field_paths=json_field_paths),
                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/packaged_modules/json/json.py", line 120, in _cast_table
                  pa_table = table_cast(pa_table, self.info.features.arrow_schema)
                             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2272, in table_cast
                  return cast_table_to_schema(table, schema)
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2218, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              document_id: string
              document_content: string
              parent_id: string
              metadata: null
              task_split: string
              passage_qrels: list<item: struct<id: string, label: double>>
                child 0, item: struct<id: string, label: double>
                    child 0, id: string
                    child 1, label: double
              full_document_qrels: list<item: struct<id: string, label: double>>
                child 0, item: struct<id: string, label: double>
                    child 0, id: string
                    child 1, label: double
              instruction: string
              use_max_p: bool
              query_content: string
              query_id: string
              passage_binary_qrels: null
              to
              {'query_id': Value('string'), 'query_content': Value('string'), 'instruction': Value('string'), 'passage_qrels': List({'id': Value('string'), 'label': Value('float64')}), 'passage_binary_qrels': Value('null'), 'full_document_qrels': List({'id': Value('string'), 'label': Value('float64')}), 'use_max_p': Value('bool'), 'metadata': Value('string'), 'task_split': Value('string')}
              because column names don't match
              
              The above exception was the direct cause of the following exception:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1347, in compute_config_parquet_and_info_response
                  parquet_operations = convert_to_parquet(builder)
                                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 980, in convert_to_parquet
                  builder.download_and_prepare(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 884, in download_and_prepare
                  self._download_and_prepare(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 947, in _download_and_prepare
                  self._prepare_split(split_generator, **prepare_split_kwargs)
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1739, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1922, in _prepare_split_single
                  raise DatasetGenerationError("An error occurred while generating the dataset") from e
              datasets.exceptions.DatasetGenerationError: An error occurred while generating the dataset

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query_id
string
query_content
string
instruction
string
passage_qrels
list
passage_binary_qrels
null
full_document_qrels
list
use_max_p
bool
metadata
string
task_split
string
2022-15
An 8-year-old boy is brought to the clinic by his parents because of weakness and difficulty of standing up from a sitting position. The mother is healthy but had a brother who died in his 20th after being disabled and using wheelchairs in the last few years of his life. Physical examination shows 3/5 lower extremity m...
Given a patient's medical history, find clinical trials that are relevant to them
[ { "id": "NCT00000524:0", "label": 0 }, { "id": "NCT00000619:0", "label": 0 }, { "id": "NCT00000619:1", "label": 0 }, { "id": "NCT00001165:0", "label": 0 }, { "id": "NCT00001165:1", "label": 0 }, { "id": "NCT00001332:0", "label": 0 }, { "id"...
null
[ { "id": "NCT00000524", "label": 0 }, { "id": "NCT00000619", "label": 0 }, { "id": "NCT00001165", "label": 0 }, { "id": "NCT00001332", "label": 0 }, { "id": "NCT00001421", "label": 0 }, { "id": "NCT00001431", "label": 0 }, { "id": "NCT000014...
true
{"year": "2022", "query_with_instruction": "Given a patient's medical history, find clinical trials that are relevant to them\nAn 8-year-old boy is brought to the clinic by his parents because of weakness and difficulty of standing up from a sitting position. The mother is healthy but had a brother who died in his 20th...
clinical_trial
2021-16
79 yo F with multifactorial chronic hypoxemia and dyspnea thought due to diastolic CHF, pulmonary hypertension thought secondary to a chronic ASD and COPD on 5L home oxygen admitted with complaints of worsening shortness of breath. Cardiology consult recommended a right heart cath for evaluation of response to sildenaf...
Given a patient's medical history, find clinical trials that are relevant to them
[ { "id": "NCT00032643:0", "label": 0 }, { "id": "NCT00032643:1", "label": 0 }, { "id": "NCT00032643:2", "label": 0 }, { "id": "NCT00037973:0", "label": 2 }, { "id": "NCT00037973:1", "label": 2 }, { "id": "NCT00041938:0", "label": 0 }, { "id"...
null
[ { "id": "NCT00032643", "label": 0 }, { "id": "NCT00037973", "label": 2 }, { "id": "NCT00041938", "label": 0 }, { "id": "NCT00043836", "label": 1 }, { "id": "NCT00098072", "label": 0 }, { "id": "NCT00098488", "label": 0 }, { "id": "NCT001024...
true
{"year": "2021", "query_with_instruction": "Given a patient's medical history, find clinical trials that are relevant to them\n79 yo F with multifactorial chronic hypoxemia and dyspnea thought due to diastolic CHF, pulmonary hypertension thought secondary to a chronic ASD and COPD on 5L home oxygen admitted with compla...
clinical_trial
2021-4
"This is a 44 year old female with PMH of PCOS, Obesity, HTN who presented with symptoms of cholecys(...TRUNCATED)
Given a patient's medical history, find clinical trials that are relevant to them
[{"id":"NCT00000776:0","label":0.0},{"id":"NCT00000776:1","label":0.0},{"id":"NCT00000776:2","label"(...TRUNCATED)
null
[{"id":"NCT00000776","label":0.0},{"id":"NCT00001301","label":1.0},{"id":"NCT00001539","label":0.0},(...TRUNCATED)
true
"{\"year\": \"2021\", \"query_with_instruction\": \"Given a patient's medical history, find clinical(...TRUNCATED)
clinical_trial
2022-32
"A 30-year-old man who is a computer scientist came to the clinic with the lab result stating azoosp(...TRUNCATED)
Given a patient's medical history, find clinical trials that are relevant to them
[{"id":"NCT00000576:0","label":0.0},{"id":"NCT00000576:1","label":0.0},{"id":"NCT00000585:0","label"(...TRUNCATED)
null
[{"id":"NCT00000576","label":0.0},{"id":"NCT00000585","label":0.0},{"id":"NCT00000653","label":0.0},(...TRUNCATED)
true
"{\"year\": \"2022\", \"query_with_instruction\": \"Given a patient's medical history, find clinical(...TRUNCATED)
clinical_trial
2021-39
"A 3-day-old Asian female infant presents with jaundice that started a day ago. She was born at 38w3(...TRUNCATED)
Given a patient's medical history, find clinical trials that are relevant to them
[{"id":"NCT00000910:0","label":2.0},{"id":"NCT00001383:0","label":0.0},{"id":"NCT00001383:1","label"(...TRUNCATED)
null
[{"id":"NCT00000910","label":2.0},{"id":"NCT00001383","label":0.0},{"id":"NCT00001386","label":0.0},(...TRUNCATED)
true
"{\"year\": \"2021\", \"query_with_instruction\": \"Given a patient's medical history, find clinical(...TRUNCATED)
clinical_trial
2021-35
"The patient is a 15 year old girl with the history of recurrent bilateral headache. The attacks com(...TRUNCATED)
Given a patient's medical history, find clinical trials that are relevant to them
[{"id":"NCT00000862:0","label":0.0},{"id":"NCT00000862:1","label":0.0},{"id":"NCT00000862:2","label"(...TRUNCATED)
null
[{"id":"NCT00000862","label":0.0},{"id":"NCT00000910","label":0.0},{"id":"NCT00001598","label":0.0},(...TRUNCATED)
true
"{\"year\": \"2021\", \"query_with_instruction\": \"Given a patient's medical history, find clinical(...TRUNCATED)
clinical_trial
2021-32
"A 17 year old boy complains of vomiting, non-bloody diarrhea, abdominal pain, fever, chills and los(...TRUNCATED)
Given a patient's medical history, find clinical trials that are relevant to them
[{"id":"NCT00001237:0","label":0.0},{"id":"NCT00001237:1","label":0.0},{"id":"NCT00001237:2","label"(...TRUNCATED)
null
[{"id":"NCT00001237","label":0.0},{"id":"NCT00002774","label":0.0},{"id":"NCT00003126","label":0.0},(...TRUNCATED)
true
"{\"year\": \"2021\", \"query_with_instruction\": \"Given a patient's medical history, find clinical(...TRUNCATED)
clinical_trial
2021-20
"A 35-year-old woman presents with history of acne and mild hirsutism. The primary evaluation reveal(...TRUNCATED)
Given a patient's medical history, find clinical trials that are relevant to them
[{"id":"NCT00000910:0","label":0.0},{"id":"NCT00001621:0","label":0.0},{"id":"NCT00001860:0","label"(...TRUNCATED)
null
[{"id":"NCT00000910","label":0.0},{"id":"NCT00001621","label":0.0},{"id":"NCT00001860","label":1.0},(...TRUNCATED)
true
"{\"year\": \"2021\", \"query_with_instruction\": \"Given a patient's medical history, find clinical(...TRUNCATED)
clinical_trial
2022-47
"A 41-year-old woman comes to the dermatology clinic complaining of facial redness, especially on he(...TRUNCATED)
Given a patient's medical history, find clinical trials that are relevant to them
[{"id":"NCT00000115:0","label":0.0},{"id":"NCT00000115:1","label":0.0},{"id":"NCT00000123:0","label"(...TRUNCATED)
null
[{"id":"NCT00000115","label":0.0},{"id":"NCT00000123","label":0.0},{"id":"NCT00000125","label":0.0},(...TRUNCATED)
true
"{\"year\": \"2022\", \"query_with_instruction\": \"Given a patient's medical history, find clinical(...TRUNCATED)
clinical_trial
2021-15
"70 year-old woman with a history of CAD recently noted abdominal mass who presents with fevers/rigo(...TRUNCATED)
Given a patient's medical history, find clinical trials that are relevant to them
[{"id":"NCT00001730:0","label":0.0},{"id":"NCT00001730:1","label":0.0},{"id":"NCT00001730:2","label"(...TRUNCATED)
null
[{"id":"NCT00001730","label":0.0},{"id":"NCT00003049","label":2.0},{"id":"NCT00003118","label":0.0},(...TRUNCATED)
true
"{\"year\": \"2021\", \"query_with_instruction\": \"Given a patient's medical history, find clinical(...TRUNCATED)
clinical_trial
End of preview.